Tuesday, November 1, 2016

Ahead of Print Middle East Respiratory Syndrome Coronavirus Transmission in Extended Family Saudi Arabia 2014 Volume 22 Number 8—August 2016 Emerging Infectious Disease journal CDC

Ahead of Print Middle East Respiratory Syndrome Coronavirus Transmission in Extended Family Saudi Arabia 2014 Volume 22 Number 8—August 2016 Emerging Infectious Disease journal CDC


Ahead of Print -Middle East Respiratory Syndrome Coronavirus Transmission in Extended Family, Saudi Arabia, 2014 - Volume 22, Number 8—August 2016 - Emerging Infectious Disease journal - CDC

Volume 22, Number 8—August 2016

Research

Middle East Respiratory Syndrome Coronavirus Transmission in Extended Family, Saudi Arabia, 2014

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  • Methods
  • Results
  • Discussion
  • Suggested Citation

Figures

  • Figure 1
  • Figure 2
  • Figure 3

Tables

  • Table 1
  • Table 2
  • Table 3

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M. Allison Arwady, Basem Alraddadi, Colin Basler, Esam I. Azhar, Eltayb Abuelzein, Abdulfattah I. Sindy, Bakr M. Bin Sadiq, Abdulhakeem O. Althaqafi, Omaima Shabouni, Ayman Banjar, Lia M. Haynes, Susan I. Gerber, Daniel R. Feikin, and Tariq A. MadaniComments to Author 
Author affiliations: Centers for Disease Control and Prevention, Atlanta, Georgia, USA (M.A. Arwady, C. Basler, L.M. Haynes, S.I. Gerber, D.R. Feikin)King Faisal Specialist Hospital and Research Center, Jeddah (B. Alraddadi);Ministry of Health, Jeddah, Saudi Arabia (B. Alraddadi, E.I. Azhar, E. Abuelzein, A.I. Sindy, B.M. Bin Sadiq, A.O. Althaqafi, O. Shabouni, A. Banjar, T.A. Madani)King Abdulaziz University, Jeddah (E.I. Azhar, T.A. Madani);Ministry of National Guard, Jeddah (A.O. Althaqafi)
Suggested citation for this article

Abstract

Risk factors for human-to-human transmission of Middle East respiratory syndrome coronavirus (MERS-CoV) are largely unknown. After MERS-CoV infections occurred in an extended family in Saudi Arabia in 2014, relatives were tested by using real-time reverse transcription PCR (rRT-PCR) and serologic methods. Among 79 relatives, 19 (24%) were MERS-CoV positive; 11 were hospitalized, and 2 died. Eleven (58%) tested positive by rRT-PCR; 8 (42%) tested negative by rRT-PCR but positive by serology. Compared with MERS-CoV–negative adult relatives, MERS-CoV–positive adult relatives were older and more likely to be male and to have chronic medical conditions. Risk factors for household transmission included sleeping in an index patient’s room and touching respiratory secretions from an index patient. Casual contact and simple proximity were not associated with transmission. Serology was more sensitive than standard rRT-PCR for identifying infected relatives, highlighting the value of including serology in future investigations.
Middle East respiratory syndrome coronavirus (MERS-CoV) was first reported in September 2012 in a patient in Saudi Arabia (1,2). MERS-CoV is known to cause a severe acute febrile respiratory illness in humans after an incubation period of 2–14 days (3). As of May 1, 2016, a total of 1,728 laboratory-confirmed cases, including 624 deaths, had been reported globally (4); all patients have been linked to the Arabian Peninsula (5,6). Studies suggest dromedary camels as a possible natural host (7), although most patients report no exposure to camels (8). Sustained human-to-human transmission in community settings has not been observed (6), but transmission has been documented in healthcare settings (9,10) and in households (1114). Specific risk factors for secondary transmission remain unknown.
In Saudi Arabia, real-time reverse transcription PCR (rRT-PCR) of nasopharyngeal or oropharyngeal swabs is used for routine MERS-CoV diagnosis and contact tracing. rRT-PCR identifies and amplifies viral RNA, indicating active infection. More recently developed serologic assays identify antibodies to MERS-CoV, indicating previous infection. MERS-CoV antibodies are rare in the general population; a nationwide serosurvey in Saudi Arabia in 2013 found antibodies in 15 (0.15%) of 10,009 persons (15).
MERS-CoV cases in Saudi Arabia increased substantially during March–April 2014 (16) in association with transmission in healthcare settings (9,10). In May 2014, as the number of urban cases decreased (10,17), a new cluster was identified 400 km south of Jeddah, in an area that had not previously reported cases. All identified patients were members of 1 extended family from the town of Al-Qouz, near Al-Qunfudah. The first MERS-CoV diagnosis was reported on May 20, 2014, in a hospitalized patient after 14 days of worsening respiratory symptoms and impending respiratory failure; by May 29, this man’s wife, brother, and nephew and the nephew’s paternal uncle had been hospitalized with confirmed MERS-CoV. These 5 relatives lived in 4 different households within Al-Qouz.
On June 4–5, 2014, representatives from the Saudi Arabia Ministry of Health (Jeddah), US Centers for Disease Control and Prevention (CDC; Atlanta, GA, USA), and King Abdulaziz University (Jeddah) joined the Al-Qunfudah Regional Health Department to investigate the family cluster. The objectives were to characterize the cluster by identifying additional cases through both rRT-PCR for viral RNA and serologic testing for MERS-CoV antibodies; to determine transmission risk factors for MERS-CoV within the affected households; and to assess possible MERS-CoV infections in the larger community, sampling both local healthcare settings and local animal workers.

Methods

Cluster Investigation
To find cases, we interviewed clinicians, reviewed regional records, and searched a national laboratory database. We interviewed all persons who had received a MERS-CoV diagnosis in the region and reviewed hospitalized patients’ medical charts; proxy interviews were conducted for patients who were in the intensive care unit or who had died. We then conducted a retrospective cohort study to assess infection risk factors among household members. We aimed to interview and test all members of the 4 households of the 5 known MERS-CoV–infected patients, as well as relatives who regularly visited these households and were present on the day of the on-site investigation.
On June 5, trained nurses collected 1 oropharyngeal and 1 nasopharyngeal swab for rRT-PCR and 1 blood sample for serologic testing from all available household members and visiting relatives. Hospitalized persons, persons who previously had tested positive by rRT-PCR, and children <14 years of age did not undergo serologic testing. Local public health officials had previously collected oropharyngeal swabs for rRT-PCR in the households during May 20–29; we reviewed these records. On June 5, trained physicians administered a standardized questionnaire to household members and visiting relatives to identify symptoms and healthcare exposures and infection risk factors, including animal contact, recent travel, underlying medical conditions, tobacco use, and details of exposure to each household’s index patient. An index patient was defined as the person with rRT-PCR confirmation of MERS-CoV who had the earliest date of symptom onset in the household.
Healthcare Worker and Community Transmission
To understand whether this outbreak was affecting the broader community, we collected data at the town’s hospital, at the outpatient clinic nearest the family’s homes, at 2 local slaughterhouse facilities, and at the town’s weekly livestock animal market. All hospital staff members who had treated the first identified MERS-CoV patient from his admission on May 9 until his MERS-CoV diagnosis on May 20 underwent hospital-based rRT-PCR of oropharyngeal swabs May 21–23; serologic testing was not performed. At the outpatient clinic, all staff and a convenience sample of patients who visited the clinic on June 4 with respiratory symptoms or fever were interviewed with a standardized questionnaire and tested for MERS-CoV by using nasopharyngeal and oropharyngeal swabs for rRT-PCR and blood for serologic testing. All animal workers at 2 local slaughterhouse facilities and a convenience sample of persons with daily animal contact who were present at the town’s weekly livestock animal market on June 4 were interviewed and tested by using the same methods.
Laboratory Testing
Specimens from hospitalized patients and hospital staff members underwent rRT-PCR at the Ministry of Health’s Jeddah regional laboratory, according to Ministry of Health protocol (18). Nasopharyngeal and oropharyngeal flocked swabs collected in the households, at the community clinic, and in animal workers were placed in viral transport media and transferred at 4°C to King Abdulaziz University, where rRT-PCR amplification of consensus viral RNA targets (upstream of E and open reading frame 1a) was undertaken (19). Serum samples were sent to CDC and screened for MERS-CoV antibodies by the recombinant MERS-CoV nucleocapsid protein ELISA, and confirmatory testing was conducted with immunofluorescence assay and microneutralization (20).
Data Analysis and Ethics Review
We analyzed questionnaire data using Epi Info 7.0 (CDC, Atlanta, GA, USA). Proportions were compared by using the ?2 or Fischer exact test and medians by using Wilcoxon rank-sum. Risk ratios (RRs) were calculated. We compared questionnaire data for all MERS-CoV–positive (by rRT-PCR or serology) relatives >14 years of age with questionnaire data for all MERS-CoV–negative relatives >14 years of age. We excluded children from analysis because they had not had antibody testing of serum. A household secondary transmission analysis comprised relatives >14 years of age residing only in the 4 affected households. Results for MERS-CoV–positive household members who had illness onset (or tested MERS-CoV–positive) at least 2 days after the household’s index patient’s illness onset were compared with results for MERS-CoV–negative household members.
Because this investigation was part of a public health response, it was not considered by CDC and the Saudi Arabia Ministry of Health to be research that was subject to review by an institutional review board. Participants gave verbal consent.

Results

Thumbnail of Family relationships and household distribution of persons infected with MERS-CoV, Al-Qouz, Saudi Arabia, 2014. Black lines denote standard family tree relationships. Patients are lettered in order of symptom onset or, if asymptomatic, by test date. Green boxes indicate households; all persons living in households 1–4 were tested, except for 2 adults living in household 4 (not shown). Index patient (person with earliest symptom onset diagnosed by rRT-PCR) in each household is underl
Figure 1. Family relationships and household distribution of persons infected with MERS-CoV, Al-Qouz, Saudi Arabia, 2014. Black lines denote standard family tree relationships. Patients are lettered in order of symptom onset or, if...
Nineteen extended family members had evidence of MERS-CoV by rRT-PCR or presence of MERS-CoV antibodies (Figure 1). Seventy-nine relatives were interviewed and tested for MERS-CoV by both rRT-PCR and (unless already positive by rRT-PCR or <14 years of age) serology. These persons comprised 50 (96%) of the 52 relatives living in the 4 original households (including 13 children <14 years of age); 26 relatives visiting those households (including 6 children <14 years of age); and 3 ill adults identified in a separate branch of the family tree (J, K, and O; Figure 1) after the household investigation. All 26 visiting relatives were MERS-CoV–negative by both rRT-PCR and (for adults) serology.
Standard Diagnosis and Disease Presentation
Thumbnail of Timeline of illness onset and testing for MERS-CoV–positive family members, Al-Qouz, Saudi Arabia, 2014. Patients M and N had mild symptoms during 2 weeks before their rRT-PCR–positive results but did not identify a specific onset date; their illness dates are estimated. Patients R and S reported symptoms during the month preceding their positive serology tests but also without a specific onset date; their illness dates are not displayed. Patients L, P, and Q denied symptoms at any
Figure 2. Timeline of illness onset and testing for MERS-CoV–positive family members, Al-Qouz, Saudi Arabia, 2014. Patients M and N had mild symptoms during 2 weeks before their rRT-PCR–positive results but did not...
MERS-CoV was diagnosed in 11 (58%) of the 19 patients by rRT-PCR, the standard method in Saudi Arabia (Table 1). For 7 of these, including the 5 original patients, illness was diagnosed during May 20–June 9 while they were hospitalized (Figure 2). For the other 4 patients (L, M, N, and O), MERS-CoV infection was diagnosed during May 22–June 11 through routine contact tracing and rRT-PCR by regional health officers. One of these contacts denied symptoms, 2 reported mild symptoms (i.e., cough, subjective fever) but had not sought medical care, and 1 (N, the only child given a MERS-CoV diagnosis) had visited an emergency department with fever. In the 4 households, all nonhospitalized family members were rRT-PCR–negative when tested on June 5, indicating little risk for ongoing household transmission.
Serologic Diagnosis and Disease Presentation
For 8 (42%) of the 19 positive family members, MERS-CoV infection was diagnosed only retrospectively by using serology. All 8 previously had tested negative by rRT-PCR during April 21–May 29 while hospitalized or during routine contact tracing, and all again tested negative on June 5. Two of these rRT-PCR–negative patients (A and B) had extended hospitalizations; 2 patients (G and H) had brief hospitalizations; 2 patients (R and S) had sought medical care but not required hospitalization; and 2 (P and Q) denied symptoms. Some of these patients had multiple negative tests; during an April 2014 hospitalization in Jeddah, patient A, the first patient in this family to become ill, had 3 negative rRT-PCR results of nasopharyngeal swabs.
Among the 19 relatives in whom MERS-CoV infection was diagnosed, 11 (58%) were hospitalized; 3 (16%) were treated in an emergency department for symptoms but not hospitalized; 2 (11%) reported mild symptoms but had not sought medical care; and 3 (16%) were asymptomatic. Five (26%) were intubated, 2 of whom (11%) died while hospitalized. Fever was the most commonly reported symptom (74%), followed by cough (63%), shortness of breath (44%), and diarrhea (44%). The 11 hospitalized patients were ill at home for a median of 3 days before hospital admission (range 0–9 days) (Figure 2).
Infection Risk Factors among Adults
Fifteen (83%) of 18 MERS-CoV–positive adults were male, compared with 15 (37%) of 41 MERS-CoV–negative adults (p = 0.0009; Table 2). MERS-CoV–positive adults were more likely to have smoked sheesha, the traditional water pipe for flavored tobacco, than were MERS-CoV–negative adults (2/18 [11%] vs. 0/41; p = 0.003) and were more likely to have traveled to Jeddah (10 [56%] vs. 9 [22%]; p = 0.011) and visited a hospital there (7 [39%] vs. 5 [12%]; p = 0.019) during the month before becoming ill. MERS-CoV–positive adults were older (median age 37 years vs. 25 years; p = 0.0011) and more likely to report chronic medical problems (8 [44%] vs. 5 [12%]; p = 0.006), including diabetes mellitus and heart disease. All MERS-CoV–positive relatives denied animal contact during the 14 days before testing.
Household Transmission
Thumbnail of Reported contact among family members who received a MERS–CoV diagnosis, Al-Qouz, Saudi Arabia, 2014. Patients L, M, and N, as well as the infected nurse, reported no or mild symptoms and could not identify onset dates; for these 4 persons, the rRT-PCR–positive date is listed. All persons were questioned about ill family members with whom they had close contact during illness. Solid arrows indicate contact between persons within 14 days (MERS–CoV incubation period is &lt;14 days) an
Figure 3. Reported contact among family members who received a MERS–CoV diagnosis, Al-Qouz, Saudi Arabia, 2014. Patients L, M, and N, as well as the infected nurse, reported no or mild symptoms and...
In household 1, eight of the 12 adults (a husband and wife, 5 of their adult sons, and 1 son’s wife) and 1 of the 7 children received a MERS-CoV diagnosis (household attack rate 44%; household adult attack rate 64%) (Figure 1). In household 2, five of the 12 adults (a husband and wife and 3 of their adult sons) received a MERS-CoV diagnosis (household attack rate 29%; household adult attack rate 42%). In households 3 and 4, only the index patients (both adult men) tested positive; no secondary patients were identified. All family members in whom MERS-CoV symptoms developed or who had positive rRT-PCR results reported contact with at least 1 ill relative in the preceding 14 days (Figure 3).
When we compared results for the 9 secondary adult patients (adults who tested MERS-CoV–positive with illness onset after the presumed index patient) in these 4 households with the results for 21 adults in the households who tested negative, we identified several major risk factors for MERS-CoV transmission in univariate analysis (Table 3). These risk factors included sleeping in the same room as an index patient (RR 4.1, 95% CI 1.5–11.2), touching his respiratory secretions (RR 4.0, 95% CI 1.6–9.8), and removing his biological waste (RR 3.2, 95% CI 1.2–8.4). Notable variables not associated with being a secondary patient included hugging or social kissing; sharing plates, cups, meals, sheesha, or a toilet; and cleaning or feeding the index patient.
Community Transmission
Except for members of this extended family, the regional hospital admitted no other MERS-CoV patients. Of 131 hospital workers who cared for patient C, 1 (0.8%), a nurse who remained asymptomatic, tested positive by rRT-PCR on May 23. All 44 persons tested at the outpatient clinic (21 patients with respiratory complaints and 23 staff) were MERS-CoV–negative by both rRT-PCR and serology. All 11 slaughterhouse workers and 10 livestock market participants tested negative by rRT-PCR. One (5%) asymptomatic slaughterhouse worker demonstrated antibodies to MERS-CoV by serology. He had no known contact with any family members in the cluster.